You didn't say what year of E46, but it probably doesn't matter. There's no way either the GM tranny of the early models, or the 5HP19 of the later models, is going to live very long behind 400 HP. I think you're either going to have to scale back your HP numbers or find a manual trans.
Having said that, there are companies who claim to be able to build one that will support 500 - 700 HP. The down side is that the trans cost almost $7,000. If you have that kind of $$ to throw at the project, cool! IMO you'd be better off throwing that money at a good 335i.
Current stable:
2002 525i (Daily Driver)
1994 SN95 Mustang 'Vert (The Bumblebee)
2001 325i Convertible (Beach cruiser project)
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