You are in luck in that an electronic, hyperlinked version of the electrical manual for your car is available here: http://wedophones.com/Manuals/BMW/. I would download it immediately if I were you!
There is a lot of information available on the subjects you asked about here on bimmerforums, mostly in the early LS-swap build threads. A list of them can be found here: https://www.bimmerforums.com/forum/s...ng-Start-Here!
I found the build threads by Braap, Tongboy, Pzary, Bimmerok, and Tipsy McStagger to be among the most useful. (That list is not exhaustive!)
There is a thread dedicated to E36-LSx wiring. The whole thread is useful, but I will give you a pointer to perhaps the motherlode: https://www.bimmerforums.com/forum/s...6#post24774946
There is much good info on this page about wiring harnesses: https://www.lt1swap.com.
I think it may be worth your while to pony up for a book on the subject: https://www.amazon.com/LS-Swaps-Anyt...dp/1613250932/ .
There is a good summary list of various odds and ends that you ask about in Tongboy's thread: https://www.bimmerforums.com/forum/s...3#post21547433
To my knowledge, the short answer on many of your wishlist is that you do not need to do ANYTHING special for: windows, headlights/taillights/turn signals, or cabin lights. The reverse light needs some attention, but the details will depend on what transmission you use. (See Tongboy's thread mentioned a minute ago.)
For ABS, you will probably need to relocate your physical ABS unit under the hood, but I am not sure about the wiring. (Mine is deleted.)
A/C involves changes, of course, to the bracket, the freon plumbing, and the wiring. Here are a few places to get started on these:
https://www.bimmerforums.com/forum/s...6#post11773856
https://www.bimmerforums.com/forum/s...h-LS1-E36-swap
https://www.bimmerforums.com/forum/s...onditioning+LS
For E39, but still useful: https://www.bimmerforums.com/forum/s...LSx-a-c-thread
https://www.bimmerforums.com/forum/s...0#post30077610
https://www.bimmerforums.com/forum/s...2#post30469092
https://www.bimmerforums.com/forum/s...3#post30130443
https://www.bimmerforums.com/forum/s...5#post30096295
I wound up using the ICI Billet bracket and a BMW compressor, but I have not finished my lines yet.
Good luck!
Diving in at the shallow end!
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